PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019377-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 507aa MW: 53356.2 Da PI: 6.6496

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019377-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.3e-12	313	358	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq NNU_019377-RA 313 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 358 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-17	306	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.15E-13	306	362	No hit	No description
PROSITE profile	PS50888	17.39	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-16	310	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-9	313	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	314	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MQPCSREMQG MASLSQMALQ ELQNGQQQQQ QMPNPQQMHQ VQGSHFDHSS HDDFLEQMLS 60 NLPWTDLPGN PKSPWDLNPQ NPNGNAAPNN NGTNNTATNQ KLFNIPIGAS NGKPRDLTED 120 QSSSQPESLH YGFDDSTLLA SRLRQHQISG NSPAAKSMAF QQQLLLSRGV GGGAGMPRLP 180 TSVPGAASLG AESGLLQLPL SLGSADSSDS RLLVDRSRDD VVDASFKSPN PNGEASVQGL 240 YNGFAGSLPR TGQTPNQQHF HHLQTGSMST QNFGAPAATG MNQAPPAAGA PAGGAAPQRQ 300 RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ 360 VKVLSMSRLG GAAAVAPLVA DISSDGGGDC IQASGGRSGN GNQTASSNDS LTMTEHQVAK 420 LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHTRNPT NGNNPLLSSN AEGPSSPSLS 480 VLTVQSATMG NGGGEASVKD ATSVSKP

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MQPCSREMQG MASLSQMALQ ELQNGQQQQQ QMPNPQQMHQ VQGSHFDHSS HDDFLEQMLS  60
NLPWTDLPGN PKSPWDLNPQ NPNGNAAPNN NGTNNTATNQ KLFNIPIGAS NGKPRDLTED  120
QSSSQPESLH YGFDDSTLLA SRLRQHQISG NSPAAKSMAF QQQLLLSRGV GGGAGMPRLP  180
TSVPGAASLG AESGLLQLPL SLGSADSSDS RLLVDRSRDD VVDASFKSPN PNGEASVQGL  240
YNGFAGSLPR TGQTPNQQHF HHLQTGSMST QNFGAPAATG MNQAPPAAGA PAGGAAPQRQ  300
RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ  360
VKVLSMSRLG GAAAVAPLVA DISSDGGGDC IQASGGRSGN GNQTASSNDS LTMTEHQVAK  420
LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHTRNPT NGNNPLLSSN AEGPSSPSLS  480
VLTVQSATMG NGGGEASVKD ATSVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	322	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275766.1	0.0	PREDICTED: transcription factor bHLH66
Refseq	XP_019055536.1	0.0	PREDICTED: transcription factor bHLH66
Refseq	XP_019055537.1	0.0	PREDICTED: transcription factor bHLH66
Swissprot	Q9ZUG9	4e-91	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1U8BGR4	0.0	A0A1U8BGR4_NELNU; transcription factor bHLH66
STRING	XP_010275766.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	8e-65	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]