PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf16706g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 412aa MW: 42365.1 Da PI: 6.5854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf16706g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.5e-12	205	250	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Niben101Scf16706g01002.1 205 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 250 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.57E-13	198	254	No hit	No description
SuperFamily	SSF47459	4.71E-17	198	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	202	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	205	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MQAMNQYDPT SSHDDFLDQI LSSVPSSSLC WPDLSKSWDP HHHHLSPPLP PNPSSGDDHQ 60 LPPSNPLQHF QYDDQSSSFL AAKLRQHQIT GGGGGGGDAV AAAKALLLQQ QLLLSRTLAG 120 NGLRSPTGAS GDNGFLNMLG NGDQNDSVGN PGGRMQAQSF GAPATAPAMN QTPAASGSAG 180 GGTTPAAQPK QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD 240 EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADMSSEGRG EGNGGRGGNG TASSSNNDSM 300 TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPMI PNGNGGNNPL 360 LGGGGGLATN GGGGEAGGPS SPKLSVLTVQ SATIGNGGID PSVKDATSVS EA

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MQAMNQYDPT SSHDDFLDQI LSSVPSSSLC WPDLSKSWDP HHHHLSPPLP PNPSSGDDHQ  60
LPPSNPLQHF QYDDQSSSFL AAKLRQHQIT GGGGGGGDAV AAAKALLLQQ QLLLSRTLAG  120
NGLRSPTGAS GDNGFLNMLG NGDQNDSVGN PGGRMQAQSF GAPATAPAMN QTPAASGSAG  180
GGTTPAAQPK QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD  240
EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADMSSEGRG EGNGGRGGNG TASSSNNDSM  300
TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPMI PNGNGGNNPL  360
LGGGGGLATN GGGGEAGGPS SPKLSVLTVQ SATIGNGGID PSVKDATSVS EA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	214	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018625009.1	0.0	PREDICTED: uncharacterized protein LOC104092228
Swissprot	Q9ZUG9	6e-90	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S3XWA3	0.0	A0A1S3XWA3_TOBAC; transcription factor bHLH66-like
STRING	XP_009596056.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-65	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]