PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109320.1
Common NameMTR_7g109320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 356aa    MW: 40428.2 Da    PI: 4.65
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l ++vk  G g+W++ ++  g+ R++k+c++rw +yl
  Medtr7g109320.1 14 KGRWTAEEDEILTQYVKANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.16.6e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE+ ++++ ++ +G++ W++Ia++++ gRt++++k++w+++l
  Medtr7g109320.1  67 RGNISSEEESIIIKMHASFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.083961IPR017930Myb domain
SuperFamilySSF466894.49E-2811108IPR009057Homeodomain-like
SMARTSM007171.5E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
CDDcd001675.09E-91661No hitNo description
PROSITE profilePS5129424.42762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2565116IPR009057Homeodomain-like
SMARTSM007173.2E-1666114IPR001005SANT/Myb domain
PfamPF002495.5E-1467112IPR001005SANT/Myb domain
CDDcd001671.52E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILTQYVK ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSEEESIIIK MHASFGNRWS LIASHLPGRT DNEIKNYWNS HLSRKVYSFR  120
GTSTTNYNNI KEIEIPSEEG IIVDTPPKRK GGRTSRWAMK KNIRYISQNV FQKSEPASIV  180
TLPPTPTLET EKMVMGSVNG PCSSGENNDI EADCDRMFGP DLKVINDGEL LDFNDIIMDA  240
LEVEEVKESN DENVVVINEI VVGDKDTNTN GTKGIERNDN VTNQCSNEEL NSSGLDDNLD  300
WESVMPLLNQ KGQSLLWEQD ENMLTWLLDD DQWEKDFQRF RDIDPQKQNA LVSWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23121165108B-MYB
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453290.0AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625950.10.0transcription factor MYB12
TrEMBLG7KSR70.0G7KSR7_MEDTR; Myb transcription factor
STRINGAES821680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-70myb domain protein 111
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]