PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g056100.4 | ||||||||
Common Name | MTR_3g056100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 439aa MW: 48032.9 Da PI: 6.7921 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.3e-31 | 99 | 156 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k Medtr3g056100.4 99 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 156 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.8 | 1.1e-33 | 257 | 315 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Medtr3g056100.4 257 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 315 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.342 | 93 | 157 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-27 | 94 | 157 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 96 | 157 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-33 | 98 | 156 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-24 | 99 | 155 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.5E-38 | 242 | 317 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-29 | 249 | 317 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 252 | 317 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 257 | 316 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 258 | 315 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MVPADFYNHA CEQSTQIDGQ GNVKSFVSSA LVKSETAVPS DEISLSSSPV QMISSGASAH 60 VEVDLDESNP SGSKATGLQV SQVDGRGNGL SVAADKASDD GYNWRKYGQK LVKGCEFPRS 120 YYKCTHPNCE VKKLFERSHD GQITEIVYKG THDHPKPQPS RRFSGGNMMS VQEERSDRAS 180 LTSRDAERDS TPELSPIAAN DGSPEGAGFL SNQNNDEVDE DDPFSKRRKM DLDITPVVKP 240 IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD 300 PKAVITTYEG KHNHDVPTAR HNSHDMAGPS AAGGQTRIRH EESDTISLDL GMGLSPTAEN 360 RPNSLGRMMR NEYGDSQTHN GNSSFKFVHS STPPPVYFGV LNNSANPYGS RENPSDSSSL 420 NRSAYPCPQN MGRIIMGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-37 | 99 | 317 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-37 | 99 | 317 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.20616 | 0.0 | glandular trichome| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g056100.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT961058 | 0.0 | CT961058.16 M.truncatula DNA sequence from clone MTH2-80N17 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600260.2 | 0.0 | probable WRKY transcription factor 20 isoform X2 | ||||
Swissprot | Q93WV0 | 1e-149 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | G7J210 | 0.0 | G7J210_MEDTR; WRKY family transcription factor | ||||
STRING | AES70510 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-152 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g056100.4 |
Entrez Gene | 11430897 |
Publications ? help Back to Top | |||
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