PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.14G112400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 461aa MW: 48223.4 Da PI: 6.5079 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 249 | 294 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Manes.14G112400.1.p 249 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 294 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.35E-13 | 242 | 298 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-17 | 242 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 244 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 246 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 249 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 461 aa Download sequence Send to blast |
MQPCSREMQG INSLLNPSSQ IPLQDLQNQQ IQTPHFDPSS SSNDDFLEQM LSTLPSCSWT 60 DLKSPWDLNP TTNLNIPINN SSANPPGDLS DETPPSIPEN VAFHNFDESA ILASKLRQHQ 120 ISGGPSPAAA AAAAAKLMLQ QQFMMATRGG AMPQNDVVDG SSFKSPTQGG DGSVQALYSN 180 GFGAGSMHGT GQASNHSQQH FHHPQAQNFS TPGGAAAMNQ SQASGSTGGA PAQPKQRVRA 240 RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL 300 SMSRLGGAAA VAPLVADMSS EGGGRGGGDC IQATANGGSL PRTSTNASQT PSSNDNTLTV 360 TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATAISTAT SHSRNPVLNA NNSNHHHNLL 420 QSNGEGPSSP SMSVLTVQSA TMGNGGGDAS VKDAASVSKP * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 253 | 258 | RLRRER |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.14G112400.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592158.1 | 0.0 | transcription factor bHLH66-like isoform X1 | ||||
Swissprot | Q9ZUG9 | 1e-84 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A2C9ULR3 | 0.0 | A0A2C9ULR3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007217m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4778 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-67 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.14G112400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|