PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000535805
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 302aa    MW: 32248.4 Da    PI: 5.3782
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000535805genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.31.9e-3663139279
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 
                    a+++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d+ ti+WLl+ a+pai+++tgt++ +a +     + s
  MDP0000535805  63 APRRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGDTIQWLLEHAEPAIIAATGTGTVPAIAIsV--NGS 139
                    789*************************************************************8888843311..111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3068148IPR005333Transcription factor, TCP
PROSITE profilePS5136926.66169123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDMIQEEQQH ERDRDQDEEA SAADLGIDGG XESDPEDPAD PSRALALPPK QEQDVPMTVA  60
VHAPRRASTK DRHTKVEGRG RRIRMPATCA ARIFQLTREL GHKSDGDTIQ WLLEHAEPAI  120
IAATGTGTVP AIAISVNGSL KIPTDVRPGD DPPDQKKRKR NSNSEYVDLN DGVSVSAGLA  180
PLTTEGRRQP PAPQPPTTAV QAVAPQGMVP MWAIPSNTVV PGAFFMVPSX TQPHIFTFPT  240
TLPAAPFINI SARPISSFVG PXSAAPATAT SSGGGTQTLR DFSLEIFDKK ELQFMSGSSN  300
H*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366730.20.0transcription factor TCP9
SwissprotO646478e-83TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A498KHQ50.0A0A498KHQ5_MALDO; Uncharacterized protein
STRINGXP_008366730.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-75TCP family protein