PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P00480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 265aa    MW: 29082.7 Da    PI: 7.3426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P00480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding544e-171360148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ l+ +vk++G+g+W++++   g+ R+ k+c++rw +yl
  GSMUA_Achr4P00480_001 13 KGPWTQEEDLVLASYVKEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 60
                           79********************************************97 PP
2Myb_DNA-binding50.45.3e-1666111148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T +E+ l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_Achr4P00480_001  66 RGNFTDQEERLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 111
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.247860IPR017930Myb domain
SuperFamilySSF466891.57E-2910107IPR009057Homeodomain-like
SMARTSM007171.0E-121262IPR001005SANT/Myb domain
PfamPF002497.5E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-231467IPR009057Homeodomain-like
CDDcd001672.94E-111560No hitNo description
PROSITE profilePS5129425.26361115IPR017930Myb domain
SMARTSM007173.8E-1665113IPR001005SANT/Myb domain
PfamPF002491.1E-1466111IPR001005SANT/Myb domain
CDDcd001673.38E-1268111No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2468115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRTPCCDKG VKKGPWTQEE DLVLASYVKE HGPGNWRAVP TNTGLMRCSK SCRLRWTNYL  60
RPGIKRGNFT DQEERLIVHL QALLGNRWAA IASYLPERTD NDIKNYWNTH LKKKLRRIQG  120
SGDGATSNGG LSRCPPVSKD QWERRSSGFS LTAPITTTYA SSTENISRLL QGWMKQSPAA  180
GADMVAGGDS TSTEGSATVA SNNGVSPVGL PDSAFKIETP TPEVSEPNLF LGENRAAMEA  240
PVFISLFETW LFDDSMPLDD TAELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395129.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV76e-88MYB60_VITVI; Transcription factor MYB60
TrEMBLM0SJW50.0M0SJW5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P00480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-86myb domain protein 94
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]