PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr11P21630_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23102.9 Da PI: 4.678 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 48 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ +Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g GSMUA_Achr11P21630_001 48 PVYKGVRRRN-GDKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAMALRG 98 68*****877.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-13 | 48 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.957 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-26 | 49 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-21 | 49 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 49 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.88E-30 | 50 | 108 | No hit | No description |
PRINTS | PR00367 | 8.4E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MESVSSDSLD SPVARRSGSD EEISYTTVLS APPKRRAGRT KFRETRHPVY KGVRRRNGDK 60 WVCEVREPNK KSRIWLGTFP TAEMAARAHD VAAMALRGRS ACLNFADSAW LLPVPESSSP 120 VDIRKAAARA AEAFQPQPES DNVPEQMEDH VMAVETVDDP FFMEDGLNFG MQGYLDMAQG 180 LLIDPPPPPA MNEEDEMDGD VILWSHSV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-14 | 47 | 105 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384526.1 | 1e-153 | PREDICTED: dehydration-responsive element-binding protein 1G-like | ||||
Swissprot | A2XWL6 | 4e-68 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 4e-68 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | M0RU93 | 1e-152 | M0RU93_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P21630_001 | 1e-152 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25480.1 | 3e-53 | dehydration response element B1A |
Publications ? help Back to Top | |||
---|---|---|---|
|