PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031893
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 418aa    MW: 45850.2 Da    PI: 7.2509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031893genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.3e-1859103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE+++++da k++G g W++I +++g ++t+ q++s+ qk+
      Lus10031893  59 REKWTDEEHQKFLDALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQKF 103
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-1653107IPR009057Homeodomain-like
PROSITE profilePS5129421.02254108IPR017930Myb domain
TIGRFAMsTIGR015579.9E-1657106IPR006447Myb domain, plants
SMARTSM007171.4E-1358106IPR001005SANT/Myb domain
PfamPF002493.6E-1559102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-105999IPR009057Homeodomain-like
CDDcd001678.81E-1261104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAATASSQDG IREGRRDMSV SGGDYYEDNN DGEQLMELNS STSQHLLKVR KPYTITKQRE  60
KWTDEEHQKF LDALKLYGRG WRKIQEHVGT KTAVQIRSHA QKFFSKVVRE TTGGSENSIK  120
PTEIPPPRPK RKPLHPYPRK CTDVSNQFET SLSPNLLCME KESHSPTSLS TVVLESPVSE  180
ALNRSSSLIS CTSDVQSSSL HPNEKESEPI GSDTSPPGNS PLSPIGSSSS PIAEKLPMVD  240
IKNAASASTV AVLAPSRSFK LFGRTVLVTD SEKYTELALS VKLSNGLVNH DSSNRLVSIQ  300
QHTSVLEVKR EVTCFSEADF SLSPCVEDDT KHKEAVDERS CTGSDAGSTS EIATRERSMD  360
VGESQCQLPS SRAKLSGSMS NRARGFMPYK RCLADRDMTS SLVASEERDQ QRARICS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031893
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047787.14e-88PREDICTED: protein REVEILLE 7-like
TrEMBLA0A2N9EYB63e-86A0A2N9EYB6_FAGSY; Uncharacterized protein
STRINGLus100318930.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.14e-57MYB_related family protein