PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 334aa    MW: 36287.6 Da    PI: 4.9272
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.47.7e-1355125268
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikege 68 
                      W++  + aLiea  e+  +l+rg+l+ p+W+ev++++ +++g+++   s +qCk++++ l+k+yk +++ +
  LPERR04G10910.1  55 WSEGATAALIEAWGERFVALGRGSLRHPQWQEVADAVsSREGYTKapkSDVQCKNRIDTLKKKYKVERNKA 125
                      *************************************87888876232667**************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-2153132No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEEDDAASSS PSMSLPVADP VTVAAAGPPA ASGLLALALP IQKQQGGSSG REDAWSEGAT  60
AALIEAWGER FVALGRGSLR HPQWQEVADA VSSREGYTKA PKSDVQCKNR IDTLKKKYKV  120
ERNKAAPSSW KVPPSPEPEP ELSDSESSDG FPPEREPAIP FMPPNGKRSR VDDGDGDRAQ  180
GLRDLAQAIR RFGEAYERVE TAKLEQAAEM ERRRLDFASE LESQRVQFFV NTQMELSQVK  240
NHSYSSPANA AAPPAAAAGG SSRRMASVND AGGNYHRRYR VSESSRHRHH PPPRPHYQYH  300
ENKVAAVTAA AAAAASDGEQ TDDEEDEDED EESQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315934e-98AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence.
GenBankAP0149604e-98AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197552.11e-118trihelix transcription factor ASIL2-like
SwissprotQ9LJG82e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D9W5I10.0A0A0D9W5I1_9ORYZ; Uncharacterized protein
STRINGLPERR04G10910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-30sequence-specific DNA binding transcription factors