PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G05550.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 249aa    MW: 28562.2 Da    PI: 9.0214
Description sequence-specific DNA binding transcription factors
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G05550.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.33.1e-1124106286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W+++ + +L+ea  ++  +l+ g+l++++W++v++++     +   +++  qCk++ + l+k+yk +k+  +       st++++++l+
  AT5G05550.2  24 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVnsrhGDNSRKKTDLQCKNRVDTLKKKYKTEKAKLSP------STWRFYNRLD 106
                  *************************************86544445577999*****************99986......68****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.2E-2322107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV  60
NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR FYNRLDVLIG PVVKKSAGGV  120
VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA  180
TAILKFGEVY ERIEGKKQQM MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS  240
ASVVWQGKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.87210.0flower| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible250766_at0.0
Expression AtlasAT5G05550-
AtGenExpressAT5G05550-
ATTED-IIAT5G05550-
Function -- GeneRIF ? help Back to Top
  1. VirF interacts with the VFP3 homolog VFP5 encoded by At5g05550.
    [PMID: 26571494]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G05550.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G05550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052410.0AB005241.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP10.
GenBankAK3186290.0AK318629.1 Arabidopsis thaliana AT5G05550 mRNA, complete cds, clone: RAFL09-36-C21.
GenBankAY0456350.0AY045635.1 Arabidopsis thaliana AT5g05550/MOP10_9 mRNA, complete cds.
GenBankAY0596510.0AY059651.1 Arabidopsis thaliana AT5g05550/MOP10_9 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850774.10.0sequence-specific DNA binding transcription factor
TrEMBLF4K0Q70.0F4K0Q7_ARATH; Sequence-specific DNA binding transcription factor
STRINGAT5G05550.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Representative plantOGRP4871684
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Juenger TE, et al.
    Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression.
    Mol. Ecol., 2006. 15(5): p. 1351-65
    [PMID:16626458]
  3. Garc
    Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF.
    PLoS ONE, 2015. 10(11): p. e0142128
    [PMID:26571494]