PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G12690.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 354aa    MW: 38360.8 Da    PI: 5.1528
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G12690.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  LPERR03G12690.2 14 RGRWTAEEDERLAGYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding414.5e-1368140248
                      SSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqkyl 48 
                      g+  +eE++ ++++++ lG++                            W++Ia++++ gRt++++k++w+++l
  LPERR03G12690.2  68 GNIAKEEEDVIIKLHATLGNRyadrstsshfllcfccflflimqmpisEWSLIASHLP-GRTDNEIKNYWNSHL 140
                      56668*****************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-21563IPR009057Homeodomain-like
PROSITE profilePS5129421.851965IPR017930Myb domain
SMARTSM007171.9E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
SuperFamilySSF466899.52E-211465IPR009057Homeodomain-like
CDDcd001674.21E-101661No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2064144IPR009057Homeodomain-like
SMARTSM007171.2E-866142IPR001005SANT/Myb domain
PROSITE profilePS512949.5166144IPR017930Myb domain
PfamPF002492.1E-1071140IPR001005SANT/Myb domain
CDDcd001674.00E-772140No hitNo description
SuperFamilySSF466899.52E-21112140IPR009057Homeodomain-like
PfamPF066403.8E-56158354IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDERLAGYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRAGVKRGNI AKEEEDVIIK LHATLGNRYA DRSTSSHFLL CFCCFLFLIM QMPISEWSLI  120
ASHLPGRTDN EIKNYWNSHL SRQIHTYRRT YTAASEAAVT IDMTKLQAAG KRRGGRTAGQ  180
SRKGDKKQAE AKQAKPAAAD STPLPESSPP RAQSVDEARS GSAVVDPEPS QQEQQPNNSS  240
GSGTQDGPCS EVTATGPTSM DAMEIGGLWE AESEFAEMEA LLCSGAAPDG LQPVDVAAQA  300
DDLLDMDWDG FATDLWGNSA QNSGGLVHDA GEPNMGCSSD ELESFASWLL SDSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-181214425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G12690.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-162CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629329.10.0myb-related protein P
SwissprotP278989e-89MYBP_MAIZE; Myb-related protein P
TrEMBLA0A0D9VT450.0A0A0D9VT45_9ORYZ; Uncharacterized protein
STRINGLPERR03G12690.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-64myb domain protein 12
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]