PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G25330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 170aa MW: 19887.1 Da PI: 7.2144 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.2 | 7.3e-13 | 80 | 134 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r rr+++NRe+ArrsR RK++++ eL v L + N++L ++l++ +++ LPERR02G25330.1 80 ERRRRRMISNRESARRSRMRKQKQLSELWAQVVHLRSTNRQLLDQLNHVIRDCDR 134 6899***************************************999998877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.6E-13 | 77 | 141 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-10 | 77 | 134 | No hit | No description |
PROSITE profile | PS50217 | 10.553 | 79 | 142 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.9E-10 | 79 | 128 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.44E-12 | 81 | 131 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 84 | 99 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.00E-14 | 86 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MYPAEIASFP YLSPATAVSF KTHYHVDTND FLLQYNSLLV SQATSYQQHV AHLPDETSLP 60 AGNKSNSDES DDYQRSLAEE RRRRRMISNR ESARRSRMRK QKQLSELWAQ VVHLRSTNRQ 120 LLDQLNHVIR DCDRIAHENC QLRDEQAKLQ KQLEKIPLEN TESTFMDPDT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 101 | RRRRRMISNRESARRSRMRKQK |
2 | 93 | 100 | RRSRMRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00647 | PBM | Transfer from LOC_Os02g49560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G25330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005284 | 0.0 | AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624540.1 | 1e-109 | basic leucine zipper 43 | ||||
TrEMBL | A0A0D9VKI6 | 1e-123 | A0A0D9VKI6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G25330.1 | 1e-124 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38800.1 | 2e-15 | basic leucine-zipper 43 |