PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G38800.1 | ||||||||
Common Name | AtbZIP43, bZIP43, K15E6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 165aa MW: 19263.5 Da PI: 5.6868 | ||||||||
Description | basic leucine-zipper 43 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.8 | 9.5e-13 | 72 | 117 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++++rk++NRe+ArrsR RK+ +++eL v L eN++L +l+ AT5G38800.1 72 RKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLN 117 689************************************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-10 | 68 | 132 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.438 | 70 | 133 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.84E-12 | 72 | 121 | No hit | No description |
Pfam | PF00170 | 4.8E-11 | 72 | 118 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-10 | 72 | 145 | No hit | No description |
CDD | cd14702 | 3.32E-17 | 73 | 121 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 75 | 90 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MQPSTNIFSL HGCPPSYLSH IPTSSPFCGQ NPNPFFSFET GVNTSQFMSL ISSNNSTSDE 60 AEENHKEIIN ERKQKRKISN RESARRSRMR KQRQVDELWS QVMWLRDENH QLLRKLNCVL 120 ESQEKVIEEN VQLKEETTEL KQMISDMQLQ NQSPFSCIRD DDDVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 91 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.30383 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30693299 | 0.0 | ||||
Genevisible | 249534_at | 0.0 | ||||
Expression Atlas | AT5G38800 | - | ||||
AtGenExpress | AT5G38800 | - | ||||
ATTED-II | AT5G38800 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00533 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G38800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G38800 | |||||
IntAct | Search Q9FMC2 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G38800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB009048 | 0.0 | AB009048.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198696.1 | 1e-119 | basic leucine-zipper 43 | ||||
Swissprot | Q9FMC2 | 1e-121 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A178UEN6 | 1e-112 | A0A178UEN6_ARATH; BZIP43 | ||||
STRING | AT5G38800.1 | 1e-119 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3112 | 26 | 67 | Representative plant | OGRP3104 | 11 | 29 |
Link Out ? help Back to Top | |
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Phytozome | AT5G38800.1 |
Entrez Gene | 833871 |
iHOP | AT5G38800 |
wikigenes | AT5G38800 |