PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0337s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 338aa    MW: 36329.9 Da    PI: 6.5034
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0337s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17240273134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Kalax.0337s0017.1.p 240 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 273
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.4E-703312IPR016679Transcription factor, GATA, plant
SMARTSM004015.2E-16234284IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.24234270IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15238297No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14238271IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.48E-14239288No hitNo description
PfamPF003204.2E-15240273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSADPTSFAA DDIDCNNFFD HMEDLLDFPE DNSKSTDNAL LGLAWNTCPH SILNPDPLFV  60
GKSIGCAPDL AAALSLPYED IVQMEWLSTF VEDSFSGGNS MTFDRQNLPD TKDPSVAPFQ  120
FLSMSPISVL ESSSNSSSSS SCSEGGKVLP RRPDSNVRIG GGCGRARSKR PRPLAFHPVS  180
ATQLISPPLA FNSFSESRSL TAGQRKKRKM NPLSSATPAA ETTSGADLTA SQSQAGVRKC  240
LHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFIPSL HSNSHKKVLE  300
MRTSSIEVPA AMLPGGKTAS DTQPEFIPNE NAMLEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316371.32e-91GATA transcription factor 8
TrEMBLA0A2R6PLQ01e-96A0A2R6PLQ0_ACTCH; GATA transcription factor
STRINGPOPTR_0010s23010.18e-92(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-40GATA transcription factor 9