PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0024s0092.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 278aa MW: 30004.5 Da PI: 8.5314 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.5 | 5e-34 | 58 | 147 | 2 | 66 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 a+kk +++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++t Kalax.0024s0092.3.p 58 APKKGPTKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATAGlhqkldeyggsslnrsnwtmvsgghH 147 789***********************************************************9867666666655554444444444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.296 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-28 | 64 | 228 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDPKKQPAAA AAMAETNHIN SSNNTSKMMI QQGGEGKEQQ LQIGISEKSD SSKKQLLAPK 60 KGPTKDRHIK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ AEPSIIAATA 120 GLHQKLDEYG GSSLNRSNWT MVSGGHHLGA SNLWPHQAQV SGLGFQIPPP PPANTGPAGG 180 ANLAGSEGSN YLQKIGFSGF EMPQGNIGHM SFTSFLSNQQ MPGLELGLSQ DGHIGVLNPQ 240 ALNQIYHQMG HGRMHHQQQQ QHQEHSPAKD DSQDSEQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021641853.1 | 3e-88 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 8e-57 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A067L058 | 8e-86 | A0A067L058_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 1e-85 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-56 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0024s0092.3.p |