PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0147.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 276aa    MW: 30824.9 Da    PI: 9.043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.0006s0147.1.p 14 KGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding605.2e-1967111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Kalax.0006s0147.1.p  67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.407961IPR017930Myb domain
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.8E-2913108IPR009057Homeodomain-like
PfamPF002492.9E-151461IPR001005SANT/Myb domain
CDDcd001671.69E-101661No hitNo description
PROSITE profilePS5129429.41162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2865116IPR009057Homeodomain-like
SMARTSM007176.3E-1866114IPR001005SANT/Myb domain
PfamPF002493.5E-1767111IPR001005SANT/Myb domain
CDDcd001671.64E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG  120
IDPATHRNIN DPSTPERSAN TNTTTTISFG ASNNNNMNAT GRDQVEDQKS LVRGIFGCKV  180
EQFPLQEQQG IPDLNLELKI SPPSCYQFQQ QQEAVLKSGR THSPAVCFAC SLGLKNSKDC  240
SCGSNGSVNN KSVVVHHDFL GLKGGVLDYR SLEMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024167693.11e-127myb-related protein 308-like
SwissprotP813931e-117MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2G9HNR91e-128A0A2G9HNR9_9LAMI; Transcription factor, Myb superfamily
STRINGEMJ018021e-126(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-103myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]