PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0081s0349.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 498aa MW: 54293.7 Da PI: 4.9747 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.7 | 1.9e-13 | 170 | 193 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+f+++tG CkyG +CkF+H+ Kaladp0081s0349.1.p 170 AEDCNFYMKTGSCKYGLSCKFNHP 193 689********************9 PP | |||||||
2 | zf-CCCH | 25.6 | 2.2e-08 | 217 | 240 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG C+F H++ Kaladp0081s0349.1.p 217 TECKYYLSAGGCKYGKACRFKHSR 240 58********************95 PP | |||||||
3 | zf-CCCH | 34.2 | 4.3e-11 | 261 | 285 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ Kaladp0081s0349.1.p 261 GEKECPYYMRNGSCKYAASCRFNHP 285 7899********************9 PP | |||||||
4 | zf-CCCH | 33.3 | 8.1e-11 | 384 | 410 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff+rtG Cky ++CkF+H++ Kaladp0081s0349.1.p 384 PGQPECTFFLRTGDCKYRSTCKFHHPK 410 5789*********************96 PP | |||||||
5 | zf-CCCH | 24.8 | 3.8e-08 | 430 | 455 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++ +G+Ck+G++C++ H+p Kaladp0081s0349.1.p 430 GQSICTHYRHYGICKFGPKCRYDHPP 455 7899********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.615 | 167 | 195 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-7 | 167 | 194 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 168 | 196 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 170 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 173 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.464 | 213 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 217 | 242 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 217 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 219 | 241 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 259 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 261 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-8 | 261 | 285 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 265 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 383 | 410 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.051 | 383 | 411 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 385 | 410 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 387 | 411 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 389 | 410 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 428 | 456 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-4 | 428 | 455 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 430 | 455 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-5 | 431 | 455 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
METPEPIPSP DSDQHQPPIH DSQPPLPDPS DDDPKSPPPA PPTEELQAMI LKEDEAPGDG 60 DGDGGRVDGV SERKDEADGG VGGVGGGGSE NEGVAESETG RQGEKEKVEE VVKDGWSDDQ 120 HGRVDGGVEE AGDGYPVDGW SIGNGEGEPD WKEEAQGRDM QVQYPLRPGA EDCNFYMKTG 180 SCKYGLSCKF NHPLRRTNQT VKPRVKERED SSERPMTECK YYLSAGGCKY GKACRFKHSR 240 ETPSVVPVLE YNFLGLPIRP GEKECPYYMR NGSCKYAASC RFNHPDPTAG SDTPSGYAND 300 EHASSWSPSR PSNEVASFVP GSYTSAQGIH PQISEWNGYQ GPVFTAEKSF RLPPAFGLNI 360 PPMAGSGYSH FPSQLASEEF PERPGQPECT FFLRTGDCKY RSTCKFHHPK DRNVQPLCAM 420 TDKGLPLRPG QSICTHYRHY GICKFGPKCR YDHPPNIQQS EASAMTGLGQ PHHPFSNFAS 480 PEDASRLSSM GEGTITL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00582 | DAP | Transfer from AT5G63260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028781830.1 | 1e-132 | zinc finger CCCH domain-containing protein 67-like isoform X3 | ||||
Swissprot | Q5RJC5 | 1e-111 | C3H67_ARATH; Zinc finger CCCH domain-containing protein 67 | ||||
STRING | EOY22360 | 1e-128 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-113 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0081s0349.1.p |