PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00011671-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 276aa MW: 30566.7 Da PI: 9.9385

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00011671-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I + ++R+ ++k++w+++ WALNUT_00011671-RA 5 KQKWTAEEEEALLAGVAKHGPGKWKNILKDPDfapflTHRSNIDLKDKWRNL 56 79************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.758	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.58E-15	2	58	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-9	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-15	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-9	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	5.41E-22	6	56	No hit	No description
SMART	SM00526	1.7E-17	112	177	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	2.2E-13	113	184	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	24.502	114	182	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	5.7E-10	116	175	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46689	1.58E-15	116	149	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPDFAPF LTHRSNIDLK DKWRNLSVST 60 SGQGSKDKSR AAKVKTTIAA PLPNVQNSSP AAPLRHNTDT VMDDPSNGTQ EGKNAPRYNA 120 MIFEALSAIE DKIGSDISAI VHFIERRHEV PQNFRRLLSS RLRRLVAQGK LEKVQNCYKI 180 RKETVLGTKT PSPKQRDVKP RQSLSSGLMT TSETVDDAAN AAAYRVADAE NKAYMAAEAV 240 KEAERISKVA EDTDSMLQLV KEIYERCSRG EIVPLA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00231	DAP	Transfer from AT1G72740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835123.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Refseq	XP_018835124.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Refseq	XP_018835125.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Swissprot	F4IEY4	3e-83	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A2I4FU12	0.0	A0A2I4FU12_JUGRE; telomere repeat-binding factor 4-like
STRING	EOY27161	1e-142	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3228	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	4e-71	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]