PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00011010-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 460aa MW: 48658.1 Da PI: 6.3891

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00011010-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	266	311	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq WALNUT_00011010-RA 266 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 311 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-17	259	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.35E-13	259	315	No hit	No description
PROSITE profile	PS50888	17.39	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	263	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	266	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MQPCSREMQG INSLLNPTQI SLQDLHDQQQ QQQSQIQSSQ IHHQVQNSHF DPTSHDDFLE 60 QMFSTIPPPS CSWSDLNPAK TPAAWDLKPR DLSDDTAPLN PDNNNNVAFQ FDDSANLASK 120 LRNHQISGSA KSAAAAAAMM LQQQLLMSRG VAGAGDSGLI PMPLSLGSAD DNVDGSSSFK 180 SPNLRAHDDS VQALFNGFAG SMHGPGQTPN QTQHFHHSQG GPVQGQNYGS PAAAMNQAPA 240 SGSAGSAPAQ PRQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML 300 DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP LVADMSPEGG GDCVQAGGGN GGAQRNQTAS 360 SNDTLMVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPTNRPVLQ 420 PNGGEGPSSP SMSVLTVQSA TLGNGTVDAS VKDSTSVSKT

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MQPCSREMQG INSLLNPTQI SLQDLHDQQQ QQQSQIQSSQ IHHQVQNSHF DPTSHDDFLE  60
QMFSTIPPPS CSWSDLNPAK TPAAWDLKPR DLSDDTAPLN PDNNNNVAFQ FDDSANLASK  120
LRNHQISGSA KSAAAAAAMM LQQQLLMSRG VAGAGDSGLI PMPLSLGSAD DNVDGSSSFK  180
SPNLRAHDDS VQALFNGFAG SMHGPGQTPN QTQHFHHSQG GPVQGQNYGS PAAAMNQAPA  240
SGSAGSAPAQ PRQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML  300
DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP LVADMSPEGG GDCVQAGGGN GGAQRNQTAS  360
SNDTLMVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPTNRPVLQ  420
PNGGEGPSSP SMSVLTVQSA TLGNGTVDAS VKDSTSVSKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	275	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833391.1	0.0	PREDICTED: transcription factor bHLH69-like
Swissprot	Q9ZUG9	4e-88	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2I4FNZ9	0.0	A0A2I4FNZ9_JUGRE; transcription factor bHLH69-like
STRING	VIT_11s0037g00040.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-59	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]