PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05684.30

Common Name

JCGZ_04017

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 461aa MW: 48467.7 Da PI: 6.6278

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05684.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	245	290	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Jcr4S05684.30 245 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 290 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-17	238	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.37E-13	238	294	No hit	No description
PROSITE profile	PS50888	17.39	240	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	242	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	245	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	246	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MQGINSLLNS SSPIPLQDLQ NQQIQNPHFD PSSASNDDFL EQMLSTIPSC SWADLKSPWD 60 LNPATNLMPI TNSTTAAVKP RDLSDETPPS IPENVGFHNN FDESALLASK LRQHQISGGE 120 GGEPLSAAAA AAAKLMLQQQ LLMAARGGAG LSQNDIIDGS SFKSPTQGGD GSAQALYNGF 180 GSGSMHGSGQ QRNQSQQQFH HAPMQPQNFS TPAVNQSQAS GSTGGAQAQP RQRVRARRGQ 240 ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR 300 LGGAAAVAPL VADISSEGGG DCIQATANGG SLPRSSNAGS QTPNDSLTGA EHQVAKLMEE 360 DMGSAMQYLQ GKGLCLMPIS LATAISTATC HNRSNNSIIN TANNNSANNL NTNNRHHHHL 420 LHSNGDGPSS PSMSVLTVQS ATMGNAGGDG SVKDAASVSK P

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MQGINSLLNS SSPIPLQDLQ NQQIQNPHFD PSSASNDDFL EQMLSTIPSC SWADLKSPWD  60
LNPATNLMPI TNSTTAAVKP RDLSDETPPS IPENVGFHNN FDESALLASK LRQHQISGGE  120
GGEPLSAAAA AAAKLMLQQQ LLMAARGGAG LSQNDIIDGS SFKSPTQGGD GSAQALYNGF  180
GSGSMHGSGQ QRNQSQQQFH HAPMQPQNFS TPAVNQSQAS GSTGGAQAQP RQRVRARRGQ  240
ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR  300
LGGAAAVAPL VADISSEGGG DCIQATANGG SLPRSSNAGS QTPNDSLTGA EHQVAKLMEE  360
DMGSAMQYLQ GKGLCLMPIS LATAISTATC HNRSNNSIIN TANNNSANNL NTNNRHHHHL  420
LHSNGDGPSS PSMSVLTVQS ATMGNAGGDG SVKDAASVSK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	254	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071482.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	4e-81	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A067L3K5	0.0	A0A067L3K5_JATCU; Uncharacterized protein
STRING	cassava4.1_007217m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-53	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]