PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00968.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 335aa    MW: 37680.5 Da    PI: 4.8533
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00968.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1987140356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Jcr4S00968.40  87 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 140
                    566899***********************************************9 PP
2HD-ZIP_I/II1185.2e-3886173186
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee..nerLekevee 86 
                    ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk +  +++L+++++e
  Jcr4S00968.40  86 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYETLKIRelKAKLDEDNAE 173
                    69*********************************************************************99765114556666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-1973144IPR009057Homeodomain-like
PROSITE profilePS5007117.44382142IPR001356Homeobox domain
SMARTSM003896.3E-1885146IPR001356Homeobox domain
CDDcd000862.24E-1687143No hitNo description
PfamPF000463.8E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-2089149IPR009057Homeodomain-like
PRINTSPR000319.8E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000319.8E-6122138IPR000047Helix-turn-helix motif
PfamPF021838.9E-7142159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGTEGGGVRG EIEKEKHGRV QTRQRCHQVM KRLSSSDSLG ALISICPTSD EHSPRNSNHV  60
YGREFQSMLD GLDEEACVEE AGHVSEKKRR LSVDQVKALE KNFEVENKLE PERKVKLAQE  120
LGLQPRQVAV WFQNRRARWK TKQLERDYGV LKANYETLKI RELKAKLDED NAESNVSVKE  180
EIIIAETDEK GSEEPPILTS IAGSETKDMN YESFNINSSN SNNGILAVSL FPDFKDGSSD  240
SDSSAILNED NNNSNNSPNP AISSSGVPQS HNQLMMSPSR PSSSSSPFQF IKTGSYQTQF  300
VKMEEHNFFS SEEACNFFSD EQAPSLQWYC PDQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081624.10.0homeobox-leucine zipper protein ATHB-6
SwissprotQ940J16e-71ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A067KD470.0A0A067KD47_JATCU; Uncharacterized protein
STRINGcassava4.1_012419m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.19e-60homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]