PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000838.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 311aa MW: 33627.4 Da PI: 6.8525 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.9 | 6.3e-37 | 68 | 145 | 2 | 78 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaess 78 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg++s +as+ a++s Itr_sc000838.1_g00016.1 68 PPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGSMPASALaAAGAS 145 789*************************************************************88888665333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-29 | 73 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 74 | 128 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDPKGSNQQE EDERLSNIPH PTSKAMMNTS NNTDENSNKR GVAEVKDFQI MVADKEEGGK 60 RQHQQLAPPK RSSNKDRHTK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ 120 AEPSIIAATG SGSMPASALA AAGASISMPM AIGMGLHNQN LDELGAQVHI GAVDSNSRAA 180 WPLIGGNLGR HHMSTPGLWP PAAAFMSSSS SSSSTSTTNL GNDTSNYQHN KGGFPGFDLP 240 FTQINPMSFT SLLSATNPQL PGLELGLSQD AHIGVLNNQA LNHIYHQQQM EQPRMQEQHQ 300 PSPKDDSQGS E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161702.1 | 1e-169 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 7e-71 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A067L058 | 1e-111 | A0A067L058_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 1e-109 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-63 | TCP family protein |