PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75886.1 | ||||||||
Common Name | CBF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23137.8 Da PI: 5.0904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.6e-18 | 54 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ grWv+e+r+p + +r++lg+f tae+Aa+a++ a+++l+g MLOC_75886.1 54 PVYKGVRRRN-PGRWVCEVREP-----HskQRIWLGTFETAEMAARAHDVAALALRG 104 68*****887.9******9996.....335*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-13 | 54 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 55 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-28 | 55 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.194 | 55 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 55 | 113 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.64E-21 | 56 | 114 | No hit | No description |
PRINTS | PR00367 | 2.6E-8 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-8 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDVGALSSDY SSGTPSPVGA DGGNSEGFST YMTVSSAPPK RRAGRTKFKE TRHPVYKGVR 60 RRNPGRWVCE VREPHSKQRI WLGTFETAEM AARAHDVAAL ALRGRAACLN FADSPRRLRV 120 PAVGASPDEI RRAAVEAAEA FLPAPDQSNA PAEEVAAAPT MQFAGDPYYG MDDGMDFGMQ 180 GYLDMAQGML IAPPPLVGPS ATAGDGDDDG EVSLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 53 | 111 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00644 | PBM | Transfer from LOC_Os02g45450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75886.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF418204 | 0.0 | AF418204.1 Hordeum vulgare subsp. vulgare CRT/DRE binding factor 1 (CBF1) mRNA, complete cds. | |||
GenBank | AY785836 | 0.0 | AY785836.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF1 (CBF1) gene, complete cds. | |||
GenBank | AY785837 | 0.0 | AY785837.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF1 (CBF1) gene, complete cds. | |||
GenBank | AY785839 | 0.0 | AY785839.1 Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF1 (CBF1) gene, complete cds. | |||
GenBank | JF796655 | 0.0 | JF796655.1 Hordeum vulgare subsp. spontaneum isolate T1 CBF protein 1 (CBF1) gene, complete cds. | |||
GenBank | JF796677 | 0.0 | JF796677.1 Hordeum vulgare isolate T2 CBF protein 1 (CBF1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193547.1 | 1e-128 | dehydration-responsive element-binding protein 1G-like | ||||
Swissprot | Q6EP77 | 1e-100 | DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G | ||||
TrEMBL | G4XE69 | 1e-156 | G4XE69_HORVS; CBF protein 1 | ||||
TrEMBL | G4XE91 | 1e-156 | G4XE91_HORVU; CBF protein 1 | ||||
TrEMBL | Q8S4R3 | 1e-156 | Q8S4R3_HORVV; CRT/DRE binding factor 1 | ||||
STRING | MLOC_75886.1 | 1e-157 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 9e-40 | dehydration response element B1A |
Publications ? help Back to Top | |||
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