PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_24530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 24661.6 Da PI: 9.5982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.1e-19 | 33 | 83 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++ a+++++g+ MLOC_24530.1 33 HYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDTAAREFRGA 83 6********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-13 | 33 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-39 | 33 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-27 | 33 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 33 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAPRAAEKAP VSPPTGLGLG VGGGVGVVAG GAHYRGVRKR PWGRFAAEIR DPAKKSRVWL 60 GTYDTAEEAA RAYDTAAREF RGAKAKTNFP FPSSSSPSPL AAGGGSPSSN STLDSSGGGS 120 GGCAQAPMQA IPLPPALDLD LFHRAAAVTA GGMRFPFNGY PVAPRQPLHP YFFYEQAAAA 180 AAASSGYRTL KMAQPVTVAA VAQSDSDSSS VVDLSPSPPA VTAHKAVAFD LDLNRPPPSE 240 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 29 | 95 | 1 | 68 | ATERF1 |
3gcc_A | 3e-23 | 29 | 95 | 1 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_24530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356211 | 0.0 | AK356211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1031H22. | |||
GenBank | AK356221 | 0.0 | AK356221.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1031L09. | |||
GenBank | AK362124 | 0.0 | AK362124.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002J20. | |||
GenBank | AK368108 | 0.0 | AK368108.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068E22. | |||
GenBank | HQ647353 | 0.0 | HQ647353.1 Hordeum vulgare subsp. vulgare cultivar Morex AP2/EREBP-like protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564396.1 | 1e-111 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | F2CX58 | 1e-170 | F2CX58_HORVV; AP2/EREBP-like protein | ||||
STRING | MLOC_24530.1 | 1e-170 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 8e-16 | erf domain protein 9 |