PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G012561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24316.2 Da PI: 9.6113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAaka++ a+++++g+ HL.SW.v1.0.G012561.1 26 HYRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAAKAYDSAAREFRGA 76 69*******.**********864...6*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.5E-40 | 26 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-30 | 26 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.8E-33 | 26 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.039 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-14 | 26 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MALKERIGVK KANHNRSIID GGKEMHYRGV RKRPWGRYAA EIRDPTKKSR VWLGTFDTAE 60 EAAKAYDSAA REFRGAKAKT NFPLPSSPSA DRSPSQSSTV ESSGNDCTDR DSTRRLGSSA 120 VFPFLQQEQV VAPPAPPPHH VVAAYRGVPA GGFIPTRPVL FFDALSRGEF VSPVYPVRFD 180 PGTVEFGSGG GAQAQSESDS SSVVEGQPRK VLDLDLNLAP PGEAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 23 | 84 | 2 | 64 | ATERF1 |
3gcc_A | 2e-22 | 23 | 84 | 2 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010091472.2 | 3e-79 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2P5DNH5 | 6e-93 | A0A2P5DNH5_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_010091472.1 | 6e-79 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-30 | erf domain protein 9 |