PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G247100.7 | ||||||||
Common Name | B456_010G247100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 253aa MW: 27123.5 Da PI: 7.2956 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.1 | 1.3e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v+gLt++hvkSHLQkYRl Gorai.010G247100.7 1 MGVQGLTIYHVKSHLQKYRL 20 99*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.9E-23 | 52 | 97 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GKKPDKKETG DMLSNLDGSS GMQITEALKL 60 QMEVQKRLHE QLEVQRQLQL RIEAQGKYLK KIIEEQRLGG VLAEAPGTGA SVPALGDNGL 120 ESDKKTDPAT PAPTSESPLQ DKAAKEGTSA KSHSVDESFS SHHEPLTPDS GCHVGSPAGS 180 PKGEMLKKKQ RVSMAGAFAK PEMVLPHQIL DSSINASYQQ SQSVFMGEQF NPSSGISIRN 240 ENQSGKGSGT EL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450884.1 | 0.0 | PREDICTED: myb family transcription factor APL | ||||
Refseq | XP_012450885.1 | 0.0 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | Q9SJW0 | 1e-100 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0D2UIL5 | 0.0 | A0A0D2UIL5_GOSRA; Uncharacterized protein | ||||
STRING | EOY29060 | 1e-150 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.2 | 3e-77 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G247100.7 |
Publications ? help Back to Top | |||
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