PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G01060.2 | ||||||||
Common Name | F23H14.3, PHL7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 25699.7 Da PI: 5.0313 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.2 | 1.2e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v+gLt++hvkSHLQkYRl AT2G01060.2 1 MGVQGLTIYHVKSHLQKYRL 20 99*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.1E-23 | 52 | 98 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGVQGLTIYH VKSHLQKYRL AKYLPDSSSE GKKTDKKESG DMLSGLDGSS GMQITEALKL 60 QMEVQKRLHE QLEVQRQLQL RIEAQGKYLK KIIEEQQRLS GVLGEPSAPV TGDSDPATPA 120 PTSESPLQDK SGKDCGPDKS LSVDESLSSY REPLTPDSGC NIGSPDESTG EERLSKKPRL 180 VRGAAGYTPD IVVGHPILES GLNTSYHQSD HVLAFDQPST SLLGAEEQLD KVSGDNL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.24449 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 262203_at | 0.0 | ||||
Expression Atlas | AT2G01060 | - | ||||
AtGenExpress | AT2G01060 | - | ||||
ATTED-II | AT2G01060 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G01060.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G01060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370550 | 0.0 | AF370550.1 Arabidopsis thaliana transfactor-like protein (At2g01060; F23H14.3) mRNA, complete cds. | |||
GenBank | BT000013 | 0.0 | BT000013.1 Arabidopsis thaliana transfactor-like protein (At2g01060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178216.1 | 1e-170 | myb-like HTH transcriptional regulator family protein | ||||
Refseq | NP_973385.1 | 1e-170 | myb-like HTH transcriptional regulator family protein | ||||
Swissprot | Q9SJW0 | 1e-171 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A178VZU9 | 1e-168 | A0A178VZU9_ARATH; Uncharacterized protein | ||||
STRING | AT2G01060.1 | 1e-169 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G01060.2 |
Entrez Gene | 814630 |
iHOP | AT2G01060 |
wikigenes | AT2G01060 |
Publications ? help Back to Top | |||
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