PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G139300.1
Common NameB456_010G139300, LOC105771572
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 388aa    MW: 43204.5 Da    PI: 6.5111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G139300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +++ +v ++G+g+W++++++ g++R++k+c++rw +yl
  Gorai.010G139300.1 14 KGLWTEEEDAKILAYVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYL 61
                        678*******************************************97 PP
2Myb_DNA-binding50.25.8e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T++E+el++++++ lG++ W+ Ia+ ++ gRt++++k++w++
  Gorai.010G139300.1  67 RESFTPQEEELIIRLHAALGSR-WSIIAQQLP-GRTDNDVKNYWNT 110
                         679*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.472965IPR017930Myb domain
SuperFamilySSF466891.29E-3011108IPR009057Homeodomain-like
SMARTSM007172.6E-151363IPR001005SANT/Myb domain
PfamPF002495.2E-171461IPR001005SANT/Myb domain
CDDcd001672.09E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2565116IPR009057Homeodomain-like
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129420.31166116IPR017930Myb domain
PfamPF002491.1E-1467110IPR001005SANT/Myb domain
CDDcd001672.08E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY  60
LRPDLKRESF TPQEEELIIR LHAALGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG  120
IDPVTHKPFS QVLADYGNIG GLLKSRTRIG SLNRDMKNSF MIKPEPHPPQ PAIATEGFSN  180
INNRRVMKTM ASPGIEPIQE NFFPSSNINQ HAATCGSLDL LSQLQAIKLV TEASNYGGYQ  240
IISPQFPNQY TLSLSSPSSS SSTSSTCSTT AQEKAGLAFS WRDFLLEDAF LPYDHHPQGQ  300
DHIPEFESKD IAPQNHSGNE TSAEHIDDDK NIIINNNSRV LSGMDSELLS YGIQASSSTE  360
SSFVAAMLDQ ENEMFSEFAN LLEDPCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448456.10.0PREDICTED: transcription factor MYB86
RefseqXP_012448457.10.0PREDICTED: transcription factor MYB86
RefseqXP_012448458.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A0D2UC280.0A0A0D2UC28_GOSRA; Uncharacterized protein
STRINGGorai.010G139300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.16e-76MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]