PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G277900.1
Common NameB456_008G277900, LOC105765550
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 294aa    MW: 33104.9 Da    PI: 6.851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G277900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.4e-161764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  Gorai.008G277900.1 17 KGLWSPEEDLKLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                        678*******************************************97 PP
2Myb_DNA-binding55.11.8e-1770115148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +T++E+e ++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
  Gorai.008G277900.1  70 RGTFTPQEEETILTLHHLLGNK-WSQIAQNLP-GRTDNEIKNYWHSYL 115
                         899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-231167IPR009057Homeodomain-like
PROSITE profilePS5129417.3541264IPR017930Myb domain
SuperFamilySSF466893.48E-2915111IPR009057Homeodomain-like
SMARTSM007171.2E-111666IPR001005SANT/Myb domain
PfamPF002492.1E-141764IPR001005SANT/Myb domain
CDDcd001672.05E-102064No hitNo description
PROSITE profilePS5129426.39665119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2668119IPR009057Homeodomain-like
SMARTSM007171.9E-1669117IPR001005SANT/Myb domain
PfamPF002491.7E-1670115IPR001005SANT/Myb domain
CDDcd001674.58E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVSRPSENNK PKAKHKKGLW SPEEDLKLRN YVLKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFTPQEEET ILTLHHLLGN KWSQIAQNLP GRTDNEIKNY WHSYLKKRIA  120
KAEEMDSQAR SQCTTSSSEN KQFTPSPRIF SDQMPTYESF NHIDKLSVST DRAVPQHVID  180
FSKEPQRSPL PKVLFAEWLS LDQECGPAAA TSYGFNHNSS SNFQDPFMDA FLLNEGTFGG  240
SDLHDGLSNG SANEMSSSLF DFETQISGNE FVGSLSGDDI CSDFNMNNNV MYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23171197108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440174.10.0PREDICTED: transcription factor LAF1
TrEMBLA0A0D2UAY00.0A0A0D2UAY0_GOSRA; Uncharacterized protein
STRINGGorai.008G277900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-55myb domain protein 19
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]