PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G192900.1
Common NameB456_007G192900, LOC105803693
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 227aa    MW: 26052.7 Da    PI: 9.5513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G192900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEde+l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Gorai.007G192900.1 14 KGSWTREEDERLIAYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                        799*****************************99************97 PP
2Myb_DNA-binding58.91.1e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
  Gorai.007G192900.1  67 RGNFTDEEDELIIKLHSLLGNK-WSIIAGRLP-GRTDNEIKNHWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.554961IPR017930Myb domain
SMARTSM007178.1E-131363IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-3013108IPR009057Homeodomain-like
PfamPF002495.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001678.48E-101661No hitNo description
PROSITE profilePS5129429.4962116IPR017930Myb domain
SMARTSM007172.6E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2869117IPR009057Homeodomain-like
CDDcd001671.07E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRSPCCEKG HTYKGSWTRE EDERLIAYIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDVKRGNF TDEEDELIIK LHSLLGNKWS IIAGRLPGRT DNEIKNHWNT HIKRKLVSRG  120
IDPLTHRPVN EQAEIHTIYT VSSTAVLRED GRQKNQELNL ELQISPPSLH SHPPQVLQKR  180
NRKVICFYCS LGIRNSKECT CEGSSHSRSI QHVSFCTWRK AFQSEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591674e-66AJ459167.1 Gossypium hirsutum partial myb137 gene, clone pGhMYB137.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491518.11e-168PREDICTED: myb-related protein 308-like
SwissprotP813933e-96MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0D2PBX81e-167A0A0D2PBX8_GOSRA; Uncharacterized protein
STRINGGorai.007G192900.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-91myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]