PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G192400.1 | ||||||||
Common Name | B456_006G192400, LOC105800059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27157.3 Da PI: 9.5635 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 73 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++ ++G g+W++ ++ g+ R++k+c++rw +yl Gorai.006G192400.1 73 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAGLLRCGKSCRLRWVNYL 120 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 126 | 168 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ Gorai.006G192400.1 126 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTENEVKNHWN 168 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.132 | 68 | 120 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.27E-26 | 72 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-10 | 72 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-13 | 73 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 74 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.11E-8 | 75 | 120 | No hit | No description |
PROSITE profile | PS51294 | 26.074 | 121 | 175 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-15 | 125 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-15 | 126 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.03E-11 | 128 | 171 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 128 | 175 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MQSVTNPTAG SRKSSHGSWG QTQTLVYIYI LLVSLFISPP LPLLWSVAFA CLNSLPLGLQ 60 MRKPCCEKKD TSKGAWSKLE DQKLTDYILK HGEGCWRSLP QAAGLLRCGK SCRLRWVNYL 120 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTE NEVKNHWNIH LRKKLLMMGI 180 DPNNRRSLLS PTLTKSNASN DSSSACQPFN PATASETISS TCLPDLNLDL TIAPPLSHQN 240 LALN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 70 | 175 | 4 | 108 | B-MYB |
1h8a_C | 3e-25 | 70 | 175 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459165 | 2e-65 | AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486405.1 | 1e-179 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 3e-74 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A0D2S646 | 1e-178 | A0A0D2S646_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G192400.1 | 1e-179 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-72 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G192400.1 |
Entrez Gene | 105800059 |
Publications ? help Back to Top | |||
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