PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G146000.1
Common NameB456_004G146000, LOC105791478
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 269aa    MW: 30888.3 Da    PI: 4.6727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G146000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-182471148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  l+ +v+ +G g+W+++ar  g++R++k+c++rw++yl
  Gorai.004G146000.1 24 KGPWTEEEDYMLKTYVNVHGEGSWNSVARLSGLKRSGKSCRLRWLNYL 71
                        79********************************************97 PP
2Myb_DNA-binding46.39.7e-1577120146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ + +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Gorai.004G146000.1  77 RGNISLQEQLLILQLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 120
                         788899****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3181975IPR017930Myb domain
SuperFamilySSF466891.54E-3021118IPR009057Homeodomain-like
SMARTSM007172.9E-152373IPR001005SANT/Myb domain
PfamPF002491.4E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-202578IPR009057Homeodomain-like
CDDcd001678.21E-112671No hitNo description
PROSITE profilePS5129416.51876126IPR017930Myb domain
SMARTSM007172.0E-1276124IPR001005SANT/Myb domain
PfamPF002491.3E-1377120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2079124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDVYESGFIS EMTPQSKEDM DVRKGPWTEE EDYMLKTYVN VHGEGSWNSV ARLSGLKRSG  60
KSCRLRWLNY LRPEVIRGNI SLQEQLLILQ LHSRWGNRWS KIAQQLPGRT DNEIKNYWRT  120
RVLKQAKQLK CDVNSQEFRD TMRCVWIPRL IERICASSGS PSAQPSTTYE KTSVLPELSG  180
TSSDSQDGQL SSVSDLTDCY NPPSYSNYPN SLQNGWGLWS ENLGGTWNIE DGVGFQATEG  240
EESMESVWNE ENIWFLRQQL YDDKDDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-232111824120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475006.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ10MB42e-73MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0D2QXN90.0A0A0D2QXN9_GOSRA; Uncharacterized protein
STRINGGorai.004G146000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.13e-71myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]