PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G118900.1 | ||||||||
Common Name | B456_004G118900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21511.4 Da PI: 7.587 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.9e-13 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l++ v ++G +W++++ g+ R +k+c++rw +yl Gorai.004G118900.1 15 KGLWSPEEDLKLKNSVLKHGHFCWSSVPINAGLQRNGKSCRLRWINYL 62 678*****************99************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.693 | 10 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 10 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.61E-19 | 17 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.93E-9 | 18 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-8 | 66 | 93 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGCRPCEKPK AKHRKGLWSP EEDLKLKNSV LKHGHFCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FTPQEDDAIL SLHHLLGNKI AKVENVEAQH TSSTSESSVL PQNLTDQSAS 120 FATDQAVPMH FDLPQRSPLP KLLFAEWLSL DEEGGRFGTD LQDLLNDASV NQLFKFESQI 180 SGNDFIGSKW E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625709.1 | 1e-119 | PREDICTED: transcription factor LAF1-like | ||||
TrEMBL | A0A0D2R362 | 1e-139 | A0A0D2R362_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G118900.1 | 1e-140 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 6e-40 | myb domain protein 45 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G118900.1 |
Publications ? help Back to Top | |||
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