PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G48920.1 | ||||||||
Common Name | AtMYB45, MYB45, T2J13.240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29875.8 Da PI: 8.3256 | ||||||||
Description | myb domain protein 45 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l v ++G g+W+tI+ g+ R +k+c++rw +yl AT3G48920.1 20 KGLWSPEEDEKLRSHVLKYGHGCWSTIPLQAGLQRNGKSCRLRWVNYL 67 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 76 | 117 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T++E+ +l+ ++ +lG++ W+ I++ ++ gRt++++k++w++ AT3G48920.1 76 FTKQEETILLSLHSMLGNK-WSQISKFLP-GRTDNEIKNYWHSN 117 9******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 14 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.579 | 15 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-11 | 19 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 19 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.12E-10 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 23.493 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 71 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-10 | 76 | 118 | No hit | No description |
Pfam | PF00249 | 2.5E-13 | 76 | 117 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVFKSEKSNR EMKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPLQA GLQRNGKSCR 60 LRWVNYLRPG LKKSLFTKQE ETILLSLHSM LGNKWSQISK FLPGRTDNEI KNYWHSNLKK 120 GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD 180 HSLLMDQSPQ KSSYVQNLVL PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE 240 FCTSFSDNFL FDGLINELRP M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-27 | 20 | 122 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 252340_at | 0.0 | ||||
Expression Atlas | AT3G48920 | - | ||||
AtGenExpress | AT3G48920 | - | ||||
ATTED-II | AT3G48920 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Member of the R2R3 factor gene family. | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G48920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | salicylic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G48920 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519596 | 0.0 | AY519596.1 Arabidopsis thaliana MYB transcription factor (At3g48920) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_190461.1 | 0.0 | myb domain protein 45 | ||||
Swissprot | Q9M0K4 | 8e-59 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | Q9SMT1 | 0.0 | Q9SMT1_ARATH; MYB transcription factor | ||||
STRING | AT3G48920.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT3G48920.1 |
Entrez Gene | 824053 |
iHOP | AT3G48920 |
wikigenes | AT3G48920 |