PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G097900.1
Common NameB456_003G097900, LOC105788423
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 318aa    MW: 34648.3 Da    PI: 4.7561
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G097900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+ +++++G g W+  +++ g+ R++k+c++rw +yl
  Gorai.003G097900.1 14 KGAWTAEEDQKLISYIQKHGEGGWRFLPQKAGLQRCGKSCRLRWANYL 61
                        79********************************************97 PP
2Myb_DNA-binding56.85.1e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg +T+eEd+ ++++ ++lG++ W++Iar+++ +Rt++++k++w+ +
  Gorai.003G097900.1  67 RGDFTPEEDKTIIKLQAELGNR-WAAIARHLP-NRTDNEIKNYWNAH 111
                         899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.333961IPR017930Myb domain
SuperFamilySSF466893.95E-3111108IPR009057Homeodomain-like
SMARTSM007177.1E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-241568IPR009057Homeodomain-like
CDDcd001673.31E-101661No hitNo description
PROSITE profilePS5129426.46862116IPR017930Myb domain
SMARTSM007173.2E-1866114IPR001005SANT/Myb domain
PfamPF002491.1E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2669116IPR009057Homeodomain-like
CDDcd001679.77E-1470112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRTPFCSSD GLKKGAWTAE EDQKLISYIQ KHGEGGWRFL PQKAGLQRCG KSCRLRWANY  60
LRPGIKRGDF TPEEDKTIIK LQAELGNRWA AIARHLPNRT DNEIKNYWNA HLKKRLANMG  120
ADQVTVSGAA SSSGNSDSNA VTDTECAKPQ QSEPTKQRSA SALLLNKLAT RVTQCVGRLR  180
ASQTLQQPTM PFNGGAESSD IFCHPLPSST PESTSWADNN NISNSLTIPE CGTTNAIDER  240
DSSSSAGVLN DIVASEFASP TCVDELSDWV NTNYSIEPEQ VQIDYSDSMT VGYGGLWDDD  300
VIVVDDDDYT VGSLGFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-28121162105C-Myb DNA-Binding Domain
1msf_C3e-28121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First present in stems, petioles and the main veins of true leaves in young seedlings. Later accumulates in leaves and present in lateral roots. During transition from the vegetative to the generative stage, preferentially expressed in inflorescence. {ECO:0000269|PubMed:17521412}.
UniprotTISSUE SPECIFICITY: Expressed in generative organs, mature leaves and trichomes. {ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:23115560}.
Functional Description ? help Back to Top
Source Description
UniProtMajor regulator of short-chained aliphatic glucosinolates (GLSs) biosynthesis. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by glucose, gibberellic acid (GA), jasmonic acid (JA) and salicylic acid (SA). Transiently induced in inflorescence by mechanical stimuli such as touch or wounding, including herbivory-wounding. Up-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:23792303}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470775.10.0PREDICTED: transcription factor MYB34
SwissprotQ9SPG21e-65MYB28_ARATH; Transcription factor MYB28
TrEMBLA0A0D2MLR50.0A0A0D2MLR5_GOSRA; Uncharacterized protein
STRINGGorai.003G097900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.12e-65myb domain protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Augustine R,Majee M,Gershenzon J,Bisht NC
    Four genes encoding MYB28, a major transcriptional regulator of the aliphatic glucosinolate pathway, are differentially expressed in the allopolyploid Brassica juncea.
    J. Exp. Bot., 2013. 64(16): p. 4907-21
    [PMID:24043856]
  5. Guo R, et al.
    Jasmonic acid and glucose synergistically modulate the accumulation of glucosinolates in Arabidopsis thaliana.
    J. Exp. Bot., 2013. 64(18): p. 5707-19
    [PMID:24151308]
  6. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  7. Li F, et al.
    Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.).
    DNA Res., 2014. 21(4): p. 355-67
    [PMID:24510440]
  8. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  9. Burow M, et al.
    The Glucosinolate Biosynthetic Gene AOP2 Mediates Feed-back Regulation of Jasmonic Acid Signaling in Arabidopsis.
    Mol Plant, 2015. 8(8): p. 1201-12
    [PMID:25758208]
  10. Martínez-Ballesta M, et al.
    The impact of the absence of aliphatic glucosinolates on water transport under salt stress in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 524
    [PMID:26236322]
  11. Seo MS, et al.
    Functional analysis of three BrMYB28 transcription factors controlling the biosynthesis of glucosinolates in Brassica rapa.
    Plant Mol. Biol., 2016. 90(4-5): p. 503-16
    [PMID:26820138]
  12. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  13. Mostafa I, et al.
    New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants.
    J Proteomics, 2016. 138: p. 1-19
    [PMID:26915584]
  14. Smith JD,Woldemariam MG,Mescher MC,Jander G,De Moraes CM
    Glucosinolates from Host Plants Influence Growth of the Parasitic Plant Cuscuta gronovii and Its Susceptibility to Aphid Feeding.
    Plant Physiol., 2016. 172(1): p. 181-97
    [PMID:27482077]
  15. Aarabi F, et al.
    Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants.
    Sci Adv, 2016. 2(10): p. e1601087
    [PMID:27730214]
  16. Mostafa I, et al.
    Membrane Proteomics of Arabidopsis Glucosinolate Mutants cyp79B2/B3 and myb28/29.
    Front Plant Sci, 2017. 8: p. 534
    [PMID:28443122]
  17. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]
  18. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]