PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.002G106300.1 | ||||||||
Common Name | B456_002G106300, LOC105782572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 40114.6 Da PI: 5.2283 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Gorai.002G106300.1 16 RGPWSPQEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Gorai.002G106300.1 69 RGNFSKEEEETIIRLHETLGNK-WSKIASHLP-GRTDNEIKNMWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.346 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.21E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.41E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.902 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-17 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.59E-12 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MGKGRAPCCD KDKVKRGPWS PQEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFSKEEEETI IRLHETLGNK WSKIASHLPG RTDNEIKNMW NTHLKKRLAP 120 KNGKIPQNDE SKETCMVSSS CSSITFVSSP CGKRNLEVEL EQQWHEGSPS KKPREGFPVS 180 DKAEDYKTEV PSHNSRPFEE PKEFPSSSIS SSNSNITNSS QVNVPNPENH GDSLLNFVGV 240 CDWKNNTSEE VNKPEILNTA FDIPLESDSD FWDMLDSLGS FQPDEIQSNE VEGNQSPDFG 300 EEYSKENENN KWLQYLEIEL GLEVTKNENH NNLSNTAAEP LVPEMYDMLL KP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-26 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ459139 | 2e-53 | AJ459139.1 Gossypium hirsutum partial myb113 gene, clone pGhMYB113. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462848.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A0D2R3V6 | 0.0 | A0A0D2R3V6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G106300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56160.1 | 1e-76 | myb domain protein 72 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.002G106300.1 |
Entrez Gene | 105782572 |
Publications ? help Back to Top | |||
---|---|---|---|
|