PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G205800.1
Common NameB456_001G205800, LOC105801407
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 180aa    MW: 20698.1 Da    PI: 6.6038
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G205800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.71.6e-1582135558
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L+++l++ ++  ++
  Gorai.001G205800.1  82 RKQRRMISNRESARRSRMRKQRHLDELWAQVVWLRNENHQLIDKLNHVSESHDR 135
                         689*******************************************99887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-1578142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.34680143IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-1382132No hitNo description
PfamPF001701.9E-1382140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-1282154No hitNo description
CDDcd147023.54E-1983134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQPSEVSGIQ YLVPSNPSPY SPHFSMNQSN KPALDSNQFL NPLYNFYIPP QIHDISPHSS  60
CISSNSTSDE ADEQQLSLII ERKQRRMISN RESARRSRMR KQRHLDELWA QVVWLRNENH  120
QLIDKLNHVS ESHDRVLQEN TQLKEEASEL RQMLFGMRLG HPNSTSVNLD DVALEHGLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488166.11e-129PREDICTED: basic leucine zipper 43-like
RefseqXP_016682285.11e-129PREDICTED: basic leucine zipper 43-like
RefseqXP_016746019.11e-129PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC28e-40BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D2PUP21e-128A0A0D2PUP2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IW191e-128A0A1U8IW19_GOSHI; basic leucine zipper 43-like
TrEMBLA0A2P5RI781e-128A0A2P5RI78_GOSBA; Uncharacterized protein
STRINGGorai.001G205800.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-44basic leucine-zipper 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]