PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.20G155100.1.p | ||||||||
Common Name | GLYMA_20G155100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 22789.3 Da PI: 5.4233 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.5e-19 | 52 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g Glyma.20G155100.1.p 52 PVYRGVRRRD-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 102 68*****999.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-14 | 52 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 53 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.906 | 53 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 53 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-32 | 53 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.04E-30 | 54 | 112 | No hit | No description |
PRINTS | PR00367 | 3.4E-9 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MFSINHFSDP DATSPGSGGS SRPALSDEDF FLAASNPKKR AGRKKFRETR HPVYRGVRRR 60 DSGKWVCEVR EPNKKSRIWL GTFPTAEMAA RAHDVAAIAL RGRSACLNFA DSASRLPVPA 120 TAEARDIQKA AAEAAEAFRP GKDDDAVAER VAATATEREE EQEEGMVPEY LRNMVLMSPT 180 HCFGSDEYGS ADVEFDDAEV SLWSYSI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 51 | 109 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.36065 | 0.0 | hypocotyl |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00002 | PBM | Transfer from 475045 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.20G155100.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF551167 | 0.0 | EF551167.1 Glycine max dehydration-responsive element binding protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235037.2 | 1e-151 | dehydration-responsive element binding protein 7 | ||||
Refseq | XP_028221142.1 | 1e-151 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9FJ93 | 1e-59 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A445F5P5 | 1e-150 | A0A445F5P5_GLYSO; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | I1NGP6 | 1e-150 | I1NGP6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G29410.1 | 1e-150 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25480.1 | 3e-56 | dehydration response element B1A |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.20G155100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|