PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 475045 | ||||||||
Common Name | ARALYDRAFT_475045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20753.6 Da PI: 5.7856 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.5 | 5e-16 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +Wv+e+r+p +r++lg++ tae+Aa+a++ a ++l+g 475045 29 IYRGVRRRN-GDKWVCEVREP-----IhqRRVWLGTYPTAEMAARAHDVAVLALRG 78 69****877.9******9997.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.70E-27 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 1.2E-11 | 28 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-29 | 29 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-25 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-20 | 29 | 88 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.062 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MENDDITVAE MKPKKRAGRK IFKETRHPIY RGVRRRNGDK WVCEVREPIH QRRVWLGTYP 60 TAEMAARAHD VAVLALRGRS ACLNFSDSAW RLPVPESTDP DTIRRTAAEA AEMFRPPEFS 120 TGITVLPSAS EFDTSDEGVA GMMMRLAEEP LMSPPRSYID MNTNMYVGEE MYYEDLSLWS 180 Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00002 | PBM | 25378322 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 475045 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC010795 | 0.0 | AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence. | |||
GenBank | AY560841 | 0.0 | AY560841.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g63030) mRNA, complete cds. | |||
GenBank | BT021917 | 0.0 | BT021917.1 Arabidopsis thaliana At1g63030 mRNA, complete cds. | |||
GenBank | BT025742 | 0.0 | BT025742.1 Arabidopsis thaliana At1g63030 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F16P17 | 0.0 | AC011000.3 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891191.1 | 1e-133 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9SGJ6 | 1e-127 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | D7KU34 | 1e-132 | D7KU34_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__175__AT1G63030.1 | 1e-132 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 1e-130 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 475045 |
Entrez Gene | 9324047 |