PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G081200.4.p
Common NameGLYMA_18G081200, LOC100781491
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 453aa    MW: 49440.2 Da    PI: 6.2355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G081200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.9e-3298155260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.18G081200.4.p  98 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 155
                          8****************************************.***************85 PP
2WRKY106.21.7e-33272330159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.18G081200.4.p 272 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 330
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.61792156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-2793156IPR003657WRKY domain
SuperFamilySSF1182903.27E-2595156IPR003657WRKY domain
SMARTSM007744.1E-3497155IPR003657WRKY domain
PfamPF031061.2E-2498154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37257332IPR003657WRKY domain
SuperFamilySSF1182901.57E-29264332IPR003657WRKY domain
PROSITE profilePS5081138.664267332IPR003657WRKY domain
SMARTSM007743.5E-39272331IPR003657WRKY domain
PfamPF031063.1E-26273330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MVPADFDNHA SEKSTQIDGQ GKAQAFDSSP LVKNESASPS NELSLSSPVQ MDCSGGSARV  60
EGDLDELNPR SNITTGLQAS QVDNRGSGLS VAADRVSDDG YNWRKYGQKH VKGSEFPRSY  120
YKCTHPNCEV KKLFERSHDG QITEIIYKGT HDHPKPQPNR RYSAGTIMSV QEERSDKVSL  180
TSRDGNGSYM CGQGSHLAEP DSQPELSPVA TNDGDLDGLG VLSNRNNDEV DDDDPFSKRR  240
KMDLGIADIT PVVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTN  300
TGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPTARNSCHD MAGPASASGQ TRIRPEESDT  360
ISLDLGMGIS PAAENTPNSQ GRMMLSEFGD SQTHTSNSNF NFVHTTTVPG YFGVLNNNSN  420
PYGSRENPSD GPSLNHSAYP CPQNIGRILM GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-3798332877Probable WRKY transcription factor 4
2lex_A6e-3798332877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.262430.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G081200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5203900.0KM520390.1 Macrotyloma uniflorum WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553015.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-153WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLI1N0D30.0I1N0D3_SOYBN; Uncharacterized protein
STRINGGLYMA18G09040.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-155WRKY family protein