PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G026400.1.p
Common NameGLYMA_16G026400, Glyma16g02960.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 374aa    MW: 41455.6 Da    PI: 4.8837
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G026400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.2e-29129190159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v++s+edp ++eitY+g+H+++
  Glyma.16G026400.1.p 129 LDDGYSWRKYGQKDILGAKFPRGYYRCTYRnvqGCLATKQVQKSDEDPMICEITYKGRHTCT 190
                          59***************************98989**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27122191IPR003657WRKY domain
PROSITE profilePS5081122.791124187IPR003657WRKY domain
SuperFamilySSF1182906.28E-25127191IPR003657WRKY domain
SMARTSM007746.6E-40129191IPR003657WRKY domain
PfamPF031066.5E-26130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEENMKCELV GLIDELMQGK ELAKQLCDHL VSLSSSSSHE TNEVLIEKIL STYEKALAML  60
NCKANVGESK ANINGSMMDS PCSFTNGSPK SEVMEPEIKN KDVFKKRKTM STCTEQVKVC  120
LGTAHEGSLD DGYSWRKYGQ KDILGAKFPR GYYRCTYRNV QGCLATKQVQ KSDEDPMICE  180
ITYKGRHTCT QASHLNKTVI PPSKTKVNLL GENKHQTHQI KNQPRQEKIE QQPPETFFTF  240
GSSSGLEVKI EDIDHKEGIF PSFCFSSPSI VGSENGDDNN SSIFSYTMIE NNLMESFSPA  300
FISPTTSDIE SNTFCHWGST GLGQSVQSSG SDITDIVSAP TSVTNSPIMD LDFFFDKIDF  360
DTDFPLSTME LCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-191281871374Disease resistance protein RRS1
5w3x_D2e-191281871374Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.333270.0cotyledon| epicotyl| flower| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G026400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312390.0KT031239.1 Glycine max clone HN_CCL_173 WRKY transcription factor (Glyma16g02960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238677.20.0WRKY transcription factor 60
RefseqXP_028207499.10.0probable WRKY transcription factor 46
TrEMBLA0A445GDE00.0A0A445GDE0_GLYSO; Putative WRKY transcription factor 46
TrEMBLI1MKL20.0I1MKL2_SOYBN; WRKY transcription factor
STRINGGLYMA16G02960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-44WRKY family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]