PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G174200.2.p
Common NameGLYMA_12G174200, LOC100778675
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 320aa    MW: 35317.7 Da    PI: 8.5615
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G174200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.2e-19233266134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Glyma.12G174200.2.p 233 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 266
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-14226288No hitNo description
SMARTSM004012.6E-17227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767227263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14231264IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.04E-15232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16233266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKDSWFFDNN FNGLSDEIFD DVINFFDFPL EDVDANGVEE DWDAQLKCLE DPRFDVYSAS  60
SAGLCAETQN EKPQLGMKLS ASSNGISPIK QLAKAPGPAY GKTIPHQNVT SNGKDLHQFQ  120
TYTYSPVSVF ESSSSSSVEN SNFDRPVIPV KRARSKRQRP SNFSPLFSIP LIVNLPAVRK  180
DQRTAASDSD FGTNVAGNLS NKVKKQRKKD LSLLSDVEMT RSSSPESGPP RKCMHCEVTK  240
TPQWREGPMG PKTLCNACGV RYRSGRLFPE YRPAASPTFV ASLHSNCHKK VVEMRSRVIQ  300
EPVRCSMLAS SNLHGNSVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320630.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G174200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992130.0BT099213.1 Soybean clone JCVI-FLGm-23B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540186.10.0GATA transcription factor 11 isoform X1
RefseqXP_028195023.10.0GATA transcription factor 11-like isoform X1
TrEMBLA0A445HRP00.0A0A445HRP0_GLYSO; GATA transcription factor 10 isoform A
TrEMBLI1LTK10.0I1LTK1_SOYBN; Uncharacterized protein
STRINGGLYMA12G29730.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-51GATA transcription factor 11