PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G08010.2 | ||||||||
Common Name | GATA11, T6D22.28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 303aa MW: 33839.1 Da PI: 8.5871 | ||||||||
Description | GATA transcription factor 11 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.7 | 2.1e-20 | 222 | 256 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l AT1G08010.2 222 CTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRL 256 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-20 | 216 | 266 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-15 | 220 | 253 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.123 | 220 | 252 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.38E-15 | 220 | 279 | No hit | No description |
CDD | cd00202 | 3.09E-17 | 221 | 278 | No hit | No description |
Pfam | PF00320 | 4.4E-18 | 222 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 222 | 247 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MNWLPEAEAE DDFKGLLSGD FFDDLINHLD VPLDDIDTTN GEGDWVDRFQ DLEPPPMDMF 60 PTLPSDLTSC GSGMAKAPRV DIQRNIPALK QSYSSEALSS TLHQSSAPPE IKVSKLFQSL 120 SPVSVLENSY GSLSTHNNGS QRLAFPVKGM RSKRKRPTTL RLSYLFPSEP RKPEKSTPGK 180 PESECYFSSE QHAKKKRKIH LTTRTVSSTL EASNSDGIVR KCTHCETTKT PQWREGPSGP 240 KTLCNACGVR FRSGRLVPEY RPASSPTFIP AVHSNSHRKI IEMRRKDDEQ FDSSMIRAVI 300 SRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.22430 | 0.0 | flower| root| seed| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145335256 | 0.0 | ||||
Expression Atlas | AT1G08010 | - | ||||
AtGenExpress | AT1G08010 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G08010.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G08010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229366 | 0.0 | AK229366.1 Arabidopsis thaliana mRNA for putative GATA transcription factor 3, complete cds, clone: RAFL16-61-D15. | |||
GenBank | BT014974 | 0.0 | BT014974.1 Arabidopsis thaliana At1g08010 gene, complete cds. | |||
GenBank | BT015713 | 0.0 | BT015713.1 Arabidopsis thaliana At1g08010 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077485.1 | 0.0 | GATA transcription factor 11 | ||||
Refseq | NP_001320942.1 | 0.0 | GATA transcription factor 11 | ||||
Refseq | NP_172279.1 | 0.0 | GATA transcription factor 11 | ||||
Swissprot | Q6DBP8 | 0.0 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | A0A384LF57 | 0.0 | A0A384LF57_ARATH; GATA11 | ||||
TrEMBL | Q0WNS0 | 0.0 | Q0WNS0_ARATH; Putative GATA transcription factor 3 | ||||
STRING | AT1G08010.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G08010.2 |
Entrez Gene | 837316 |
iHOP | AT1G08010 |
wikigenes | AT1G08010 |