PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1078
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 193aa    MW: 21733.6 Da    PI: 7.1801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1078genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++v ++G  +W++++   g+ R +k+c++rw +yl
      Gh_D08G1078 15 KGLWSPEEDLKLKNYVLKHGHFCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*****************99************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-211065IPR009057Homeodomain-like
PROSITE profilePS5129421.7321066IPR017930Myb domain
SMARTSM007172.4E-101464IPR001005SANT/Myb domain
PfamPF002493.7E-131562IPR001005SANT/Myb domain
SuperFamilySSF466892.33E-191789IPR009057Homeodomain-like
CDDcd001678.60E-101862No hitNo description
Gene3DG3DSA:1.10.10.603.5E-86691IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGCKPCEKPK AKHRKGLWSP EEDLKLKNYV LKHGHFCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FTPQEDDAIL SLHHLLGNNS TIAKVENVEA QHTSSTSESS VLPQNLTDQS  120
ASFATDQAVP MHFDLPQRSP LPKLLFAEWL SLDEEGGRFG TDLQDLLNDA SVNQLFKFES  180
QISGNDFIGS KWE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625709.11e-120PREDICTED: transcription factor LAF1-like
TrEMBLA0A0D2R3621e-136A0A0D2R362_GOSRA; Uncharacterized protein
STRINGGorai.004G118900.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.12e-39myb domain protein 45