PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 403aa MW: 45007.1 Da PI: 4.8626 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd ll ++++ G g+W++ ++ g+ R++k+c++rw +yl Gh_D07G1261 14 KGRWTAEEDVLLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l Gh_D07G1261 67 RGNFTSQEEEVIINLHATLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.106 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.37E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.173 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.06E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTAE EDVLLTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNF TSQEEEVIIN LHATLGNRWS LIASYLPGRT DNEIKNYWNS HLSRKIHSFR 120 RPLTQSMPVI MDLTKTAVIA KRKGGRTSEG SMKENKSCST QKDTGSCSNK PTENVCVNEV 180 VPFPSTPLLE KETLSTTAIE DRMVLDQHGE DKERTTHVVP SPCHDTVVEG MLGSSEERES 240 LVSEEGTIEN SMQCPSGNAE KGTGILAPHE SIDSSEIEWF NDILDSELLQ PSGDLTFTEL 300 GEDSGNVKTH TTAANNEEIV SRNCSADSGG DLSSCTSTTF YFVDDWEWEN VVPRSELWDE 360 KEYMCSWLWE PSDYHGKGER HKVDDNGFEG HNPMIAANAS LFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 2921335 | 0.0 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF034132 | 0.0 | AF034132.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479507.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: myb-related protein Zm1 | ||||
TrEMBL | A0A0D2N9K2 | 0.0 | A0A0D2N9K2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G143200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17349 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 9e-75 | myb domain protein 12 |