PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0614
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 424aa    MW: 47414.9 Da    PI: 8.1124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0614genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-175498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+e++++a +++G g W+ I +++g ++++ q++s+ qk+
      Gh_D07G0614 54 REKWTEEEHERFLEALRLYGRG-WRQIEEHVG-TKSAVQIRSHAQKF 98
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.23E-1648102IPR009057Homeodomain-like
PROSITE profilePS5129421.31749103IPR017930Myb domain
TIGRFAMsTIGR015574.2E-1652101IPR006447Myb domain, plants
SMARTSM007171.5E-1253101IPR001005SANT/Myb domain
PfamPF002491.5E-145497IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-95494IPR009057Homeodomain-like
CDDcd001679.88E-115699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDTQDQIEDK TSPNAFKSGI CPQSMTLNQL QELYTFNHDH TPKARKPYTI TKQREKWTEE  60
EHERFLEALR LYGRGWRQIE EHVGTKSAVQ IRSHAQKFFS KVVRESNGGF DGSIKSIVIP  120
PPRPKRKPVH PYPRKSVDLV KGKSPSSQPE RSPSPNQFFR EQDNKSPTSV LSDAMGSSAL  180
EQQKGCSSPT SCTTNLQSIN TSPVEKETDY ATSNLAAEEE KPSLSSVKMF GQSDAENILS  240
MNLNADFKDF VFGEGNAAPV IPSTSIKLFG KTVQFRHFLQ HTLDTSLSHG TVIDNWNAMP  300
SRANLSTSDA PLPWWAFYQG VPFCYITSFN QNRSDSSVGE RMKEREILNE GSCSGSNTGS  360
VSHVSRRVSD CIDSESQHPC LEGKMSPQRC TKGFVPYKRC LAERDMTSSV VSEGQETHRA  420
RVCS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151190.0boll| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469140.10.0PREDICTED: protein REVEILLE 7-like isoform X1
RefseqXP_012469145.10.0PREDICTED: protein REVEILLE 7-like isoform X1
RefseqXP_012469149.10.0PREDICTED: protein REVEILLE 7-like isoform X1
TrEMBLA0A2P5RA530.0A0A2P5RA53_GOSBA; Uncharacterized protein
STRINGGorai.001G069700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-52MYB_related family protein