PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 32349.6 Da PI: 7.5492 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+ +++ +G g W+ +++ g++R++k+c++rw++yl Gh_D07G0169 29 KGAWTDWEDKILASYINVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 76 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 82 | 126 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Gh_D07G0169 82 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 126 78999*****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-22 | 20 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.989 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-27 | 26 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-12 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 29 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.06E-9 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.17 | 77 | 131 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 80 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-15 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 82 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-10 | 86 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDLYKQRERV GEIRSMGKSS CCSKEGLKKG AWTDWEDKIL ASYINVHGEG KWRNLPKRAG 60 LKRCGKSCRL RWLNYLRPDI KRGNISHDEE ELIIRLHNLL GNRWSLIAGR LPGRTDNEIK 120 NYWNTTLGKR AKAQASIDAK TIPTESRLNE PSKSSTKIEV IRTKAIRCSS KVMVPLQPPA 180 THQHGQHHCT NNNEEMGGGI STIEAHNGIQ MLESLYSDGG SNLLSFEINE LLKSHDGGEF 240 EENPMQQHFP LGEAMLKDWS TCHCLDDNGA TDLESLAFLL DTDEWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-22 | 27 | 131 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 13346189 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336284 | 0.0 | AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314377.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | Q9FJA2 | 3e-62 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A1U8MXN0 | 0.0 | A0A1U8MXN0_GOSHI; Transcription factor TT2 | ||||
STRING | Gorai.001G020600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-64 | MYB family protein |