PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 31678.4 Da PI: 8.0426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W++ ++ g+ R++k+c++rw +yl Gh_D05G2607 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++ Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++ Gh_D05G2607 67 RGNFSEAEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.586 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.39E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.452 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.54E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SEAEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHGPLN QPTNTNKSTE LDFRNVPKAS KSNFAPNPSR DFNFNEFQVK AKAESIEEGT 180 SSSSGMTTDE EQQQEEEQDK YAGNSQELDL ELSIGISSSG KNNNSTGVST ANSAESKPLL 240 DKSNFQFLGQ AMAAKAVCLC CQLGFGTSEI CRNCQSTNGF NTYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1236 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF421795 | 0.0 | EF421795.1 Gossypium hirsutum MYB8 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016686896.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 5e-97 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A2P5SHF1 | 0.0 | A0A2P5SHF1_GOSBA; Uncharacterized protein | ||||
TrEMBL | B1N7Z6 | 0.0 | B1N7Z6_GOSHI; MYB8 | ||||
STRING | Gorai.009G288900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-90 | myb domain protein 3 |