PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 534aa MW: 58529.8 Da PI: 7.1403 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.2e-15 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d+v+ +G g+W+++ + g+ R++k+c++rw ++l Gh_D01G0645 32 KGPWTAAEDAVLADYVRTHGEGNWNAVQKNTGLARCGKSCRLRWANHL 79 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++v++++++G++ W++ a ++ gRt++++k++w++ Gh_D01G0645 85 KGAFSPEEERIIVELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 128 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.158 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-28 | 31 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-12 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.56E-10 | 34 | 79 | No hit | No description |
PROSITE profile | PS51294 | 25.567 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-16 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 85 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.13E-11 | 87 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-25 | 87 | 133 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MMMMGGNNQI TTQNEGGGSN NGGGEGGIML KKGPWTAAED AVLADYVRTH GEGNWNAVQK 60 NTGLARCGKS CRLRWANHLR PNLKKGAFSP EEERIIVELH AKMGNKWARM ATQLPGRTDN 120 EIKNYWNTRV KRRQRQGLPL YPPEIQPLYS QHQRNQHRSL PSTPLPSPTA TPTSSFSFQT 180 PPNPSSSTTL HASILTPAHP LRIPRSASSH VLYNPQTPPP LHSASAVSTP CPSPLPSSSP 240 STPTPVSPLQ SPHKPAFSTL PLFDSSTSNT CNNNINTNNA ILQSPSDFFF PRATPPLQTP 300 MRYKRFRPDV SESINNERHN NSISVNGGCS STSSSFMSQY PPFQKTSFFN SHAAPNVTTS 360 TPLTSPHYSP SYTLDPVTLD LASSSRILAD HQNFDNGQFI STPGFDYTSK TDELPSNQFL 420 SLDGTSEVTF DTKGNCNYIS NDQNNHHHLS IHFGGGGLLD DMLEEAQLLA GDNDILRRES 480 CLDGFNTSSD GLTSGKEETV TDQEINATQE EYSRLLNAIP SSMPMPDWYN NCGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 30 | 133 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578703 | 6e-95 | JX578703.1 Gossypium hirsutum clone NBRI_GE10781 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016707250.1 | 0.0 | PREDICTED: myb-like protein A | ||||
TrEMBL | A0A1U8KXU5 | 0.0 | A0A1U8KXU5_GOSHI; myb-like protein A | ||||
STRING | Gorai.002G089900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 6e-70 | myb domain protein 101 |